Hi Alexandre,
the commit seems to be also in galaxy-dist now. Anyway,
this command should do the trick:
hg pull -b stable
https://bitbucket.org/galaxy/galaxy-central
I'd suggest you to use
directly the stable branch of galaxy-central, which usually gets the
hotfixes much faster than
Because of the way the infrastructure for my Galaxy instance is set up, I
need to download and install tools from the toolshed manually. For most of
the tools, this is pretty easy, however I'm now trying to add RSEM to my
instance and it has some new datatypes.
Along with the new data types is
Hi Daniel,
Thanks for the answer.
How can I update my Galaxy instance with this fix? The fix is on
galaxy-central repository and I've cloned the galaxy-dist repository.
Thanks a lot,
Alexandre
2015-01-14 18:29 GMT-02:00 Daniel Blankenberg d...@bx.psu.edu:
Hi Alexandre,
Thanks for reporting
I thought the difference may be in the -central config handling that didn’t
work with my universe_wsgi anymore or something. Will be hard to trace so I
will leave this for now.
I'll mail you more about the collections though, probably tomorrow.
cheers,
—
Jorrit Boekel
Proteomics systems
Sorry for the delayed response - I am not really an expert on Galaxy's
egg stuff - but I believe running `python scripts/fetch_eggs.py`
before starting Galaxy usually fixes these problems for reasons I
don't understand. One probably shouldn't need to manually install mock
or pycrypto though.
Hi all
For what it's worth, I manually installed mock (and pycrypto because
that was the next thing it complained about) and it worked after that.
Ulf
On 14/01/15 14:23, Ulf Schaefer wrote:
Hi all
After the announcements this morning, I upgraded to the latest stable
release as suggested
Dear All,
Could someone let me know if there is already a data manager tool for getting
liftOver reference data within Galaxy or should I write one? Please let me know.
Kind regards,
Anne.
--
Dr Anne Pajon - Bioinformatics Core
Cancer Research UK - Cambridge Institute
Li Ka Shing Centre,
