Re: [galaxy-dev] Job still waiting - Command Line None - SGE

2015-06-30 Thread Alexander Vowinkel
At what galaxy version are you? 2015-06-30 7:36 GMT-05:00 Gildas Le Corguille lecorgui...@sb-roscoff.fr: Hi, We have a problem on our production instances since one or two years (never found the time to write it and we still hope to find by ourself). Some jobs stay in waiting status

Re: [galaxy-dev] output filter bugs

2015-06-30 Thread John Chilton
On Mon, Jun 29, 2015 at 2:48 PM, Alexander Vowinkel vowinkel.alexan...@gmail.com wrote: Hi, I have a tool with filtered outputs (data [..]filter[...]/data). A) As I understood the filters are pure python. But if I put it in ![CDATA[, it doesn't work. I think this should work even better ;)

Re: [galaxy-dev] Job still waiting - Command Line None - SGE

2015-06-30 Thread Gildas Le Corguille
Not the last :/ changeset: 16054:11e14ac45c7e branch: stable tag: tip user:Nate Coraor n...@bx.psu.edu date:Wed Jan 21 16:00:24 2015 -0500 summary: Update tag latest_2015.01.13 for changeset 4039bfd5584a Gildas Le 30/06/2015 16:36, Alexander Vowinkel a écrit

Re: [galaxy-dev] output filter bugs

2015-06-30 Thread Alexander Vowinkel
2015-06-30 11:04 GMT-05:00 John Chilton jmchil...@gmail.com: On Mon, Jun 29, 2015 at 2:48 PM, Alexander Vowinkel vowinkel.alexan...@gmail.com wrote: I have a tool with filtered outputs (data [..]filter[...]/data). A) As I understood the filters are pure python. But if I put it in

[galaxy-dev] cloudman persist filesystem error

2015-06-30 Thread Alexander Vowinkel
Hi, from IRC this question/bug report: (18:06:13) avowinkel: some cloudman guy here? enis? (18:06:30) avowinkel: AttributeError: 'NoneType' object has no attribute 'id' (18:06:50) avowinkel: when persisting galaxyIndices (18:07:43) avowinkel: snapshot is created, but it crashes when ... somewhen