Hi,
I have been testing tools not yet ready for a tool-shed but had trouble finding
the dependencies as there was no database entries to load these.
The code in lib/galaxy/tools/deps/resolvers/galaxy_packages.py assumes that the
env.sh or bin directory will be in dependency_dir/package/version
Hi
I've set-up a local Galaxy instance and have been using the data manager /
tool-shed to set up tools and indexes etc.
I've installed both bowtie2 and tophat2 but when i come to run tophat 2
I get the following error:
tophat2 --num-threads ${GALAXY_SLOTS:-4}
Hello Everyone,
Performed a data retrieval using the rsync method for mm10 and also downloaded
the .loc files per the Data Integration page
to the tool-data directory. The paths match in the .loc file for bowtie2 of
the mm10 download directory.
My problem is that I'm not seeing mm10 in the
Hi Enis,
I am trying to launch my cloudman instance with this launcher again:
https://launch.usegalaxy.org/launch
You created the flavor for me because it wouldn't load my
galaxyIndices from the snaps.yaml in my default bucket.
I thought, this problem was fixed, but it still creates a