[galaxy-dev] Current state of cloudman etc. within private AWS VPCs?

2016-01-29 Thread Chris Dagdigian
Apologies if this is asked often, I did a bit of searching and google-foo but could not find very new news... I've long been a fan/user of cloudman-managed Galaxy clusters but for the first time I need galaxy in an AWS environment where we absolutely cannot stand up any sort of public facin

Re: [galaxy-dev] BED12 Data Format

2016-01-29 Thread Lance Parsons
Well, I somewhat follow you. My main goal would be to allow people to use GTF files in the RSeQC tools. My initial thought was to write a tool to convert GTF to BED12 (which I've done). However, it would be really nice to have Galaxy be able to automatically convert behind the scenes. The probl

Re: [galaxy-dev] Current state of cloudman etc. within private AWS VPCs?

2016-01-29 Thread Enis Afgan
Hi Chris, I believe you're the first person that's tried to run this in a completely private VPC so I don't have experience with it but can suggest a change that might get over this initial hump at least. My guess is that get_galaxy_dns method is why you're seeing this log message ( https://github