[galaxy-dev] Jupyter

2016-02-10 Thread Jasper Koehorst
I am currently experimenting with jupyter and it finally works as I am able to use the environment on a local machine. However beside python2.7 how do I load a galaxy history file into for example R, Bash, etc? I could not really find any documentation on these languages beside python 2.7. Is th

Re: [galaxy-dev] Jupyter

2016-02-10 Thread Björn Grüning
Am 10.02.2016 um 15:25 schrieb Jasper Koehorst: > I am currently experimenting with jupyter and it finally works as I am > able to use the environment on a local machine. > However beside python2.7 how do I load a galaxy history file into for > example R, Bash, etc? I could not really find any do

Re: [galaxy-dev] Jupyter

2016-02-10 Thread Jasper Koehorst
Thanks, almost worked… get --id 78 bash: /home/jovyan/py/get: Permission denied I assume the jovyan is a docker user? On 10/02/16 15:36, "Björn Grüning" wrote: > > >Am 10.02.2016 um 15:25 schrieb Jasper Koehorst: >> I am currently experimenting with jupyter and it finally works as I am >>

Re: [galaxy-dev] Jupyter

2016-02-10 Thread Björn Grüning
If fixed this in the container, builds are triggered, so hopefully in a few hour you can pull the new image and this is working for you! Thanks for reporting! Bjoern > Thanks, almost worked… > > get --id 78 > bash: /home/jovyan/py/get: Permission denied > > I assume the jovyan is a docker user?