Re: [galaxy-dev] remote user CAS invalide session

2016-04-20 Thread Laure QUINTRIC
Thank you for your quick support. Laure Le 19/04/2016 19:05, Dannon Baker a écrit : This turned out to be a problem with how the maildomain was handled after a recent fix to support API interactions bypassing remote user auth. I'm working on a fix which you can follow and test here:

[galaxy-dev] set_metadata in galaxy_XXX.sh script

2016-04-20 Thread Laure QUINTRIC
Hi there (sorry for all theses questions), when I execute a job with remote user drmaa configuration on our pbs cluster, I see in the job working directory the script the galaxy_XXX.sh which set the galaxy virtual env and execute set_metadata.py after tool_script.sh completion but I get this

[galaxy-dev] galaxy running problem

2016-04-20 Thread V . Freire-Beneitez
Dear Sir or Madam, Since yesterday I have been trying to run some RNA-sequencing analysis using the tools from galaxy, but it seems that it is frozen not even sending to queue the runnings and the tophats are not working. The webpage says that it is being updated and there could be some

[galaxy-dev] FTP Authentication Against Postgres Database with PBKDF2

2016-04-20 Thread Joseph Brent Greer
Hi All, We're having problems setting up ftp and authenticating against the postgres database. We've reviewed these pages and a few others: Galaxy Page: https://wiki.galaxyproject.org/Admin/Config/UploadviaFTP Peter Briggs Blog Post: