Dear all,
I would like to add an url on my help section of a tool on my xml file
however it does not work,
https://10.38.14.14/api/fs/dir.html?path=/home/user/&user=galaxy
I think it is the &user=galaxy doesn't work in the xml .
Mohamed
_
This could be as simple as the & needing to be
escaped as & or better escaping the whole
help text using CDATA:
https://galaxy-iuc-standards.readthedocs.io/en/latest/best_practices/tool_xml.html#help-tag
Can you show us your tool XML file? Is it on GitHub?
Peter
On Tue, Aug 2, 2016 at 10:26 AM,
Great - I'm glad it was an easy fix.
Peter
On Tue, Aug 2, 2016 at 10:36 AM, Mohamed Kassam wrote:
> Hell Peter
> The CDATA works perfectly thanks again.
>
> Mohamed
>
> 2016-08-02 11:31 GMT+02:00 Peter Cock :
>>
>> This could be as simple as the & needing to be
>> escaped as & or better escaping
Dear all,
I'm not sure but I think I found a bug somewhere. However, I can't
tell where the problem is and, so, who to report it to.
This is what I see in paster.log:
-
galaxy.jobs.runners.drmaa DEBUG 2016-08-01 13:02:08,895 (897/193391)
state change: job finished normally
galaxy.jobs.outpu
Hi Ray,
I don't see anything strange in the Galaxy logs. The job on the cluster
"finished normally" just means that it completed its execution without
being killed by the cluster scheduler or for other external reasons. The
second line in the logs is telling you that Galaxy has seen that the jo
Cross referencing this open issue which looks like the same thing:
https://github.com/peterjc/galaxy_blast/issues/80
We're probably going to return the BLAST datatypes to the Galaxy core,
which will resolve this in a different way:
https://lists.galaxyproject.org/pipermail/galaxy-dev/2016-August
Hi Nicola,
Ah! I see! I misunderstood how the logs worked.
I thought whatever message Cuffdiff returns with, it passes it to the
scheduler. Then, the scheduler in turn passes it to Galaxy. I was
confused why Cuffdiff and Galaxy recognized the mistake but the
scheduler did not.
Now I see! Wh
Hello,
In the saved histories, the selected page goes to the first page all the
times. I think it is not convenient. Let's say I want to browse the
histories in page 17. (maybe 20 histories are there). I had to click again
the page 17 (button navigation) if I want to browse another history in page
