[galaxy-dev] Local galaxy reading shed_tool_conf xml section in reverse

2016-10-13 Thread evan clark
I have modified the shed tool conf xml in order to add labels to tool sections and it appears to now be reading the xml in reverse and ordering the tools in the tool panel incorrectly. Image of issue: https://www.dropbox.com/s/rxbr2tpqkpeeysw/Screen%20Shot%202016-10-12%20at%2010.24.13%20PM.png

[galaxy-dev] Pulsar - running as real DRMAA user problems

2016-10-13 Thread Poole, Richard
Hey John, So I’ve been happily using Pulsar to send all my Galaxy server jobs to our cluster here at UCL for several months now (I love it!). I am now exploring the ‘run-as-real-user’ option for DRMAA submissions and have run into a problem. The files are correctly staged, correctly chowned, su

[galaxy-dev] There is a bug in Lefse system

2016-10-13 Thread Bueno Silva,Carla Grazielle
Hi! I'm trying to upload my data in Lefse system, but it show this message: "Failed: Bad Request (400)" Yesterday I tried and I could upload these files, but today I can not upload the same files. I think it's a problem in the website. Could you please help me? Thank you! =) Carla.

Re: [galaxy-dev] There is a bug in Lefse system

2016-10-13 Thread Jennifer Hillman-Jackson
Hello, Perhaps try contacting the lab directly to see if there are known issues? https://wiki.galaxyproject.org/PublicGalaxyServers#Huttenhower_Lab Thanks! Jen -- Jennifer Hillman-Jackson Galaxy Application Support http://usegalaxy.org http://galaxyproject.org http://biostar.usegalaxy.org On