[galaxy-dev] Tool wrapper NotFound error

2016-10-26 Thread evan clark
I have written the below tool wrapper and when running in galaxy I receive the error. I am not sure the issue with the wrapper. Traceback (most recent call last): File "/home/eclark28/galaxy_production/galaxy/lib/galaxy/jobs/runners/__init__.py", line 170, in prepare_job

[galaxy-dev] Error on chemfp version 1.1p1 installation

2016-10-26 Thread Léo Biscassi
Hi all, I'm trying install chemical toolbox on a local instance and I got an error the following error raised by chemfp dependency: File "/home/leobiscassi/programs/galaxy-local/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 685, in execute_step dir =

Re: [galaxy-dev] Tool wrapper NotFound error

2016-10-26 Thread John Chilton
It looks like your library conditional is wrapped in a section called "basicOptions". For this reason when it appears in your block you need to use $basicOptions.library.type for instance instead of $library.type. Hope this helps and thanks for using Galaxy! -John On Wed, Oct 26, 2016 at 11:39