Re: [galaxy-dev] Check running jobs

2017-01-27 Thread Peter Cock
Hi Katherine, I don't think Galaxy itself will tell you this, in part because the details would be dependent on the Cluster being used. I would do that via whatever cluster management system you are running (e.g. qstat or qmon if using SGE). By default all the jobs will be submitted by the Galax

Re: [galaxy-dev] Check running jobs

2017-01-27 Thread Katherine Beaulieu
Ok so there is no way to access the galaxy object outside of galaxy? I'm looking for something like the 'trans' variable often seen throughout the Galaxy code base so that I can use sqlalchemy and make a database query. Thanks for replying. Katherine On Fri, Jan 27, 2017 at 5:40 AM, Peter Cock wr

Re: [galaxy-dev] Check running jobs

2017-01-27 Thread Peter Cock
Ah - I assumed you meant from the user-facing UI, or the reports page. I would suggest exploring the advance job metrics options, see e.g. https://github.com/galaxyproject/galaxy/blob/dev/config/job_metrics_conf.xml.sample I've never used it, but perhaps the backend using Collectl (http://collec