Dear galaxy-devs,
What would be the galaxy way to convert tabular data (e.g. the tabular
output of BLAST or infernal) into bed or alignments?
For bed it seems like that cutting the columns and using awk to adapt
the positions to the bed definitions and switch coordinates for the
reverse
Dear Marius,
thanks for the information. You are right, there are entries in
shed_tool_conf.xml for tools which I have uninstalled. I can manually
remove them. I will file an issue because in the best case these
entries would be removed when tools are uninstalled.
Best,
Matthias
On
Hi Matthias,
so typically what's happening there is that there is no
tool_shed_respository entry in the database for this tool.
I see this in my development instance when I setup a new database, but keep
my old shed_tool_conf.xml.
If you want to get rid of these errors you can uninstall the
