[galaxy-dev] fonts on headless compute nodes

2018-04-11 Thread Matthias Bernt
Dear list, I found that some tools (eg FastQC and MetaProSIP) have problems with missing fonts (the former is java and the latter caused by R) on our compute nodes which do not have xorg and no fonts installed. On the cluster head nodes several font related packages are installed:

[galaxy-dev] April Galactic News: UseGalaxy.org gets some siblings, GCCBOSC and other event news; new pubs, servers, jobs, ...

2018-04-11 Thread Dave Clements
Hello all, The April 2018 Galactic News highlights what's going on in the Galaxy (and it's actually quite cool). Take a look: - *UseGalaxy.eu and UseGalaxy.org.au Launched

Re: [galaxy-dev] fonts on headless compute nodes

2018-04-11 Thread Björn Grüning
Hi Matthias, can you make sure FASTQC gets the openjdk version from conda-forge and not from defaults? This will fix our one problem. MetaProSIP should add additional dependencies to the conda package. Ideally no requirements are needed on the system level. This is not always possible, for

[galaxy-dev] Doubts about FTP upload.

2018-04-11 Thread Álvaro Rios
Dear I am trying to upload files via FTP. However, the following message appears. "Authentication required ftp://usegalaxy.org Your connection to this site is not private." I do not have the experience to use galaxy, What I need to do? Thank you. Álvaro Rios.

Re: [galaxy-dev] Doubts about FTP upload.

2018-04-11 Thread Jennifer Hillman-Jackson
Hello, The server name is *usegalaxy.org * (no ftp:// prefix). Full FTP upload help is here: https://galaxyproject.org/ftp-upload/ Thanks! Jen -- Jennifer Hillman-Jackson Galaxy Application Support http://usegalaxy.org http://galaxyproject.org