Dear all,
I have been trying to get deseq2 (latest version 17, 2018-09-05 from
iuc; we are still running on galaxy version 17.09) to work properly but
to no avail. Older versions have other errors, I have focused on the
latest version.
I get this cryptic error when I run it:
Dear all,
I have been trying to get deseq2 (latest version 17, 2018-09-05 from
iuc; we are still running on galaxy version 17.09) to work properly but
to no avail. Older versions have other errors, I have focused on the
latest version.
I get this cryptic error when I run it:
Hi Peter vH,
I wonder if adding columns is not supported - because some tools
would define the table without the extra column? You might have
to define a new data table instead (with largely the same content).
But to be clear, I am not an expert in this area of Galaxy.
However, it does seem the
Thanks a lot!
I got it to work exactly as you said.
Cheers,
Christopher
On Sep 18, 2018, at 15:56, Marius van den Beek
mailto:m.vandenb...@gmail.com>> wrote:
Hi Christopher,
due to the old version of Galaxy you need to manually update Conda (conda
update conda)
and explicitly set the current
Hi,
today we tried to update from 17.10 to 18.05
your server is running but with out any interface, its just white after
loading?
Galaxy
| AP - Group
# tail ./galaxy-dist/dsmerror.log
09/05/2018 11:18:21 ANS0361I DIAG: TransErrno:
Hi Christopher,
due to the old version of Galaxy you need to manually update Conda (conda
update conda)
and explicitly set the current channel order in your galaxy.ini file, this
should be
conda_ensure_channels = iuc,conda-forge,bioconda,defaults
With these set you can remove the exisiting conda
Yes that was my conclusion, thanks Peter.
As a result I switched to a new table named (shapeit2_ref) and a new tool
name (data_manager_shapeit2_reference) and from planemo side upload seemed
to succeed but the tool is in an error state. I resorted to manually
editing the tool-data table.
Data
Can you look and see which resources are failing to load? That'd help me
figure out what's going on here. If you have any local changes to the
interface you will need to run 'make client-production' from the root of
the repository (which should be safe to do in any event, and will rebuild
the
