[galaxy-dev] Using pbs-python with glibc version 2.12

2016-11-17 Thread David Lee
Hi, I'm trying to install Galaxy version 16.07 on a cluster with the PBS job scheduler that is using glibc version 2.12. The following error message suggests that pbs-python needs at least glibc version 2.14 - assert pbs is not None, PBS_IMPORT_MESSAGE AssertionError: The Python

Re: [galaxy-dev] Using pbs-python with glibc version 2.12

2016-11-18 Thread David Lee
on` > 3. Download/unpack the source tarball from ftp://ftp.surfsara.nl/ > pub/outgoing/pbs_python.tar.gz > 4. In the pbs_python source: `./configure --prefix=/panfs/panasas01/ > dedicated-galaxy/galaxy/galaxy/.venv` > 5. `make install` > > --nate > > On Thu, Nov 17, 2016

Re: [galaxy-dev] Conda problem

2018-05-24 Thread David Lee
/pkgs/. After I deleted these directories the error messages disappeared and tools are running again. Cheers, David From: Peter Cock <p.j.a.c...@googlemail.com> Sent: 24 May 2018 14:22:40 To: David Lee Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [gala

[galaxy-dev] Conda problem

2018-05-24 Thread David Lee
Hi, I hope somebody can help me with this. I've been maintaining a Galaxy installation for the past few months that has suddenly developed a problem that I can't undo. I think it occurred after installing samtools and sambamba packages which I have subsequently uninstalled but which has made