On Mon, 03 Aug 2015 17:30:05 +0200
Björn Grüning bjoern.gruen...@gmail.com wrote:
I would recommend you Galaxy Flavours. We have a few, for example
RNA-Seq, ChIP-seq etc ... join us! :)
That was my first port of call, but they lacked quite a few tools. For
example the RNA-Seq lacked tophat,
On Tue, 4 Aug 2015 17:26:00 +
Kandalaft, Iyad iyad.kandal...@agr.gc.ca wrote:
As a supplement to Oksana's original inquiry, we, at AAFC, couple
Galaxy to SGE and possibly a different grid engine in the future for
job scheduling. The old-fashioned way of doing that is to unify
storage
Hi,
I am also thinking in doing something similar.
My idea would be to deploy a galaxy docker on demand per project. The
docker would have a galaxy installation that would be configured to
join a cluster. Most of the computation would actually occur on the
cluster.
Each project would thus have
Hi,
I am afraid that I might be overlooking something obvious but...
I am trying to add a few tools to the RAD-Seq portfolio of Galaxy. For
that effect I am designing a few package wrappers. My problem is to
understand the best practice to develop wrappers for dependencies of
external tools.
On Tue, 20 Oct 2015 14:48:08 +0200
Bjoern Gruening wrote:
> Hi Tiago,
>
> for simple tool_dependencies you can use the new planemo depbash
> command from Peter:
> https://github.com/galaxyproject/planemo/pull/310
Gosh, this is exactly what the doctor ordered. Thanks
Hi,
I have a couple of GATK issues
1. First is there a data manager for it? I have tried Generate
GATK-sorted Picard indexes (data_manager_gatk_picard_index_builder) -
builder and got no entries on the cached picard genomes.
2. With problem 1, we are using genomes from the history. It so