Hi all, We've been running a galaxy server for the last few years successfully, using pbs_python for connection to our HPC. Recently, we've purchased a new system, and we're trying to install galaxy on it. However, we are having some issues.
When we try to submit jobs, galaxy returns the following error: galaxy.jobs.runners.pbs WARNING 2017-02-15 16:55:22,178 (20) pbs_submit failed (try 1/5), PBS error 15025: Bad UID for job execution On the pbs_server, we see: 02/16/2017 09:14:43.631;128;PBS_Server.7156;Req;req_reject;Reject reply code=15025(Bad UID for job execution MSG=ruserok failed validating galaxyuser/galaxyuser from galaxy.uza.be), aux=0, type=QueueJob, from galaxyu...@galaxy.uza.be However, when we submit the generated qsub script manually, using the same user, queue and pbs_account (-A) settings, the job runs just fine. In our opinion this indicats an issue with galaxy somewhere. Running jobs locally also works. The docs state that we need to scramble a specific pbs_python version for our recent pbs version, but the mentioned files are missing in galaxy 16_10. Some information: ============= pbs_server version : 6.02 galaxy: v16_10 deprecated procedures: https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster (in PBS : egss.ini and scripts/scramble.py are missing) Has anybody seen this before? Are there newer docs available on pbs_python ? Best, Geert ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
