Re: [galaxy-dev] Bismark doesn't end and blocks the server

om >> To: tuto...@hotmail.com; galaxy-dev@lists.galaxyproject.org >> Subject: Re: [galaxy-dev] Bismark doesn't end and blocks the server >> >> Hi, >> >> I think this is a general problem you encountered here with unsorted BAM >> files. We can reproduce

Re: [galaxy-dev] Bismark doesn't end and blocks the server

r the workaround. Cheers,Cristian > Date: Mon, 8 Jun 2015 11:22:44 +0200 > From: bjoern.gruen...@gmail.com > To: tuto...@hotmail.com; galaxy-dev@lists.galaxyproject.org > Subject: Re: [galaxy-dev] Bismark doesn't end and blocks the server > > Hi, > > I think this is

Re: [galaxy-dev] Bismark doesn't end and blocks the server

Hi, I think this is a general problem you encountered here with unsorted BAM files. We can reproduce it locally. Will let you know if I find a workaround. Cheers, Bjoer Am 05.06.2015 um 14:23 schrieb C. Ch.: > Hi all, I have a clean local install of galaxy from git (commit: > 40b69cb948eed2cece8

[galaxy-dev] Bismark doesn't end and blocks the server

Hi all, I have a clean local install of galaxy from git (commit: 40b69cb948eed2cece82a32dfc5c6116414ab97c).I've installed bismark and I get an error message (see below) if I do not choose the 'sort' option.I have the impression that this might be related more to galaxy than to bismark itself. T