Re: [galaxy-dev] Broken package_perl_5_18, was Re: JBrowse on dev branch: progress

2016-02-26 Thread Peter Briggs
Thanks Peter - this specific package has now been fixed in the toolsheds and should work without patching the Galaxy code. I understand that more generally Nicola is working on applying the same fix (removing whitespace around the target URL when using the "download_file" action) in other packa

Re: [galaxy-dev] Broken package_perl_5_18, was Re: JBrowse on dev branch: progress

2016-02-25 Thread Peter van Heusden
I knew there was an email that I forgot to send! Nicola Soranzo fixed this with galaxy PR https://github.com/galaxyproject/galaxy/pull/1775 - sometime in November last year Eric added whitespace to the perl package (and a bunch of other things) that broke the download_file action, so Nicola's patch

[galaxy-dev] Broken package_perl_5_18, was Re: JBrowse on dev branch: progress

2016-02-25 Thread Peter Briggs
Hello Peter Re the failing install of 'package_perl_5_18', I've investigated further now and have submitted a patch which seems to fix the problem: https://github.com/galaxyproject/tools-iuc/pull/616 Not sure if this is of any immediate help, Best wishes Peter On 22/02/16 09:43, Peter van