[galaxy-dev] Connection to PBS server XXX for state check failed - is it possible to get any help?
Dear All, is it possible to get any help in a subject of pbs_python problems? Especially Galaxy crash related to this issue. Let me remind: I encountered exactly the same problem: http://osdir.lowified.com/galaxy-development-source-control/2012-07/msg00132.html However my Galaxy instance completely crashes until restart, I am getting Proxy Error on HTTPd. Any help would be much appreciated. In logs I have: galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,306 connection to PBS server ce.reef.man.poznan.pl for state check failed galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,380 (441/13320109.ce.reef.man.poznan.pl) Skipping state check because PBS server connection failed galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,430 (444/13320114.ce.reef.man.poznan.pl) Skipping state check because PBS server connection failed +2+12+19+6galaxy+0+32+12+9job_state+1+0+0+02+172+14resources_used+1+0+0 +02+142+11exit_status+1+0+0+0+0 But the PBS server works fine. -- Pozdrawiam, -- Zuzanna K. Filutowska, HPC Systems Administrator Poznan Supercomputing and Networking Center Institute of Bioorganic Chemistry Polish Academy of Sciences Seize the day boys! Make your lifes extraordinary! --John Keating ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Connection to PBS server XXX for state check failed
Dnia 2015-09-09, śro o godzinie 18:29 +0200, Zuzanna K. Filutowska pisze: > Dear All, > > I encountered exactly the same problem: > http://osdir.lowified.com/galaxy-development-source-control/2012-07/msg00132.html > > However my Galaxy instance completely crashes until restart, I am > getting Proxy Error on HTTPd. Any help would be much appreciated, as we > will have Galaxy workshop on Monday at our University. > > In logs I have: > galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,306 connection to PBS > server ce.reef.man.poznan.pl for state check failed > galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,380 > (441/13320109.ce.reef.man.poznan.pl) Skipping state check because PBS > server connection failed > galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,430 > (444/13320114.ce.reef.man.poznan.pl) Skipping state check because PBS > server connection failed > +2+12+19+6galaxy+0+32+12+9job_state+1+0+0+02+172+14resources_used+1+0+0 > +02+142+11exit_status+1+0+0+0+0 > > But the PBS server works fine. I forgot to mention that I used python 2.7 and used pbs_python versions 4.3.5 and 4.4. -- Pozdrawiam, -- Zuzanna K. Filutowska www: http://platyna.org Trzeba mieć wytrwałość i wiarę w siebie, że jest się do czegoś zdolnym. -- Maria Curie-Skłodowska ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Connection to PBS server XXX for state check failed
Dnia 2015-09-09, śro o godzinie 18:29 +0200, Zuzanna K. Filutowska pisze: > Dear All, > > I encountered exactly the same problem: > http://osdir.lowified.com/galaxy-development-source-control/2012-07/msg00132.html > > However my Galaxy instance completely crashes until restart, I am > getting Proxy Error on HTTPd. Any help would be much appreciated, as we > will have Galaxy workshop on Monday at our University. > > In logs I have: > galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,306 connection to PBS > server ce.reef.man.poznan.pl for state check failed > galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,380 > (441/13320109.ce.reef.man.poznan.pl) Skipping state check because PBS > server connection failed > galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,430 > (444/13320114.ce.reef.man.poznan.pl) Skipping state check because PBS > server connection failed > +2+12+19+6galaxy+0+32+12+9job_state+1+0+0+02+172+14resources_used+1+0+0 > +02+142+11exit_status+1+0+0+0+0 > > But the PBS server works fine. I forgot to mention that I used python 2.7 and used pbs_python versions 4.3.5 and 4.4. -- Pozdrawiam, -- Pozdrawiam, -- Zuzanna K. Filutowska, HPC Systems Administrator Poznan Supercomputing and Networking Center Institute of Bioorganic Chemistry Polish Academy of Sciences Seize the day boys! Make your lifes extraordinary! --John Keating ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Connection to PBS server XXX for state check failed
Dear All, I encountered exactly the same problem: http://osdir.lowified.com/galaxy-development-source-control/2012-07/msg00132.html However my Galaxy instance completely crashes until restart, I am getting Proxy Error on HTTPd. Any help would be much appreciated, as we will have Galaxy workshop on Monday at our University. In logs I have: galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,306 connection to PBS server ce.reef.man.poznan.pl for state check failed galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,380 (441/13320109.ce.reef.man.poznan.pl) Skipping state check because PBS server connection failed galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,430 (444/13320114.ce.reef.man.poznan.pl) Skipping state check because PBS server connection failed +2+12+19+6galaxy+0+32+12+9job_state+1+0+0+02+172+14resources_used+1+0+0 +02+142+11exit_status+1+0+0+0+0 But the PBS server works fine. -- Pozdrawiam, -- Zuzanna K. Filutowska, HPC Systems Administrator Poznan Supercomputing and Networking Center Institute of Bioorganic Chemistry Polish Academy of Sciences Seize the day boys! Make your lifes extraordinary! --John Keating ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
