I installed the latest Galaxy (v15.07) and tested with a job. I found my
local environment setup file was not executed. The line of code that
executes the local setup file is
[ -f "config/local_env.sh" ] && . config/local_env.sh
Further looking into the galaxy_xx.sh file shows the current directory of
the script is $working_directory before "cd $working_directory" is
executed. This is not the case in previous versions, where the job's
current directory is the root of the Galaxy server in the beginning, until
"cd $working_directory" is executed.
I think making the current directory first at the root of the Galaxy server
is better since I don't need to put a full path in galaxy.ini for the
environment_setup_file. Will you change this back to it was?
Thanks,
Ping
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
