Hi Björn,
Brilliant! Thanks. That is exactly what I was looking for.
Cheers,
Keith
On May 24, 2015, at 4:49 AM, Björn Grüning bjoern.gruen...@gmail.com wrote:
Hi Keith,
I'm a fan of learning by eyample, so please find attached the BRAT VIS :)
Put the folder into your ./config/plugins/visualizations/ folder and
restart Galaxy. You should see a new visualisation in every text
datatype in your Galaxy history. (We should change this later to JSON).
Have a look at the nlp_brat.xml file in config and the nlp_brat.mako
file. This is everything what you need to adopt or change if you want to
create a VIS.
Hope this helps,
Bjoern
Am 24.05.2015 um 02:45 schrieb Keith Suderman:
Greetings,
I am looking for information, tips, and pointers on writing a component for
visualizing text data in Galaxy. In particular I would like to use Brat
(http://brat.nlplab.org/embed.html) which can be embedded in web pages/apps.
The “Implementation Details” section on the Learn/Visualization page
(https://wiki.galaxyproject.org/Learn/Visualization#Implementation_Details)
hints at exactly what I want to do:
- use AJAX to fetch JSON data.
- use a Javascript client to draw the data
I can do both of the above steps, I am just not sure how to wire Brat into
Galaxy. All of the documentation I can find about visualization covers
installing existing Genome visualization tools and nothing about how to
adapt an existing Javascript client to work in Galaxy. I am hoping someone
can sketch out the basic steps I need to accomplish before I spend too much
time grepping through the Galaxy code base.
Cheers,
Keith
--
Research Associate
Department of Computer Science
Vassar College
Poughkeepsie, NY
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nlp_brat.tar.bz2
--
Research Associate
Department of Computer Science
Vassar College
Poughkeepsie, NY
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