Re: [galaxy-dev] Error during FASTQ preview

2018-03-13 Thread Peter Cock 
This could be a special character unicode issue, but my guess
is something has gone wrong with compression.

Can you identify the file on disk (easy via the history "i" for
information icon if this option is enabled; by default Galaxy
does not tell you the file path)?

Then try the Unix command "head" on the file to inspect it
manually - is it plain text FASTQ?

Peter

On Tue, Mar 13, 2018 at 4:02 PM, Previti
 wrote:
> Dear all,
>
> I've recently had following error occur on our local Galaxy instance.
>
> Every time I want to preview a fastq file it gives this:
>
> Content Encoding Error
>
> The page you are trying to view cannot be shown because it uses an invalid
> or unsupported form of compression.
>
> Please contact the website owners to inform them of this problem.
>
> Any idea how to solve this...? This is the first time I'm seeing itI
> tried changing the data type multiple times (fastq, fastq.gz,
> fastqsanger...etc) but this doesn't get rid of it.
>
> Best regards,
>
> Christopher Previti
>
>
>
> --
> Dr. Christopher Previti
> Genomics and Proteomics Core Facility
> High Throughput Sequencing (W190)
> Bioinformatician
>
> German Cancer Research Center (DKFZ)
> Foundation under Public Law
> Im Neuenheimer Feld 580
> 69120 Heidelberg
> Germany
> Room: B2.102 (INF580/TP3)
> Phone: +49 6221 42-4661
>
> christopher.prev...@dkfz.de
> www.dkfz.de
>
> Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
> VAT-ID No.: DE143293537
>
> Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die Personen
> bestimmt, an die sie adressiert ist.
> Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte
> Informationen enthalten. Sollten Sie nicht
> der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den Absender
> und löschen Sie die Mitteilung.
> Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist
> untersagt.
>
>
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
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On Tue, Mar 13,
2018 at 4:02 PM, Previti mailto:christopher.prev...@dkfz-heidelberg.de;
target="_blank">christopher.prev...@dkfz-heidelberg.de
wrote:




  
Dear all,
I've recently had following error occur on our local Galaxy
  instance.
Every time I want to preview a fastq file it gives this:
Content Encoding Error
  
  The page you are trying to view cannot be shown because it uses an
  invalid or unsupported form of compression.
  
   Please contact the website owners to inform
them of this
  problem.
  
  Any idea how to solve this...? This is the first time I'm seeing
  itI tried changing the data type multiple times (fastq,
  fastq.gz, fastqsanger...etc) but this doesn't get rid of it.

Best regards,
Christopher Previti





-- 
  Dr.
  Christopher Previti
Genomics and Proteomics
Core Facility
High Throughput Sequencing (W190)
Bioinformatician
  
  German Cancer Research Center (DKFZ)
  Foundation under Public Law
  Im Neuenheimer Feld 580
  69120 Heidelberg
  Germany
  Room: B2.102 (INF580/TP3)
  Phone: +49 6221 42-4661

  http://www.dkfz.de/;
target="_blank"
data-saferedirecturl="https://www.google.com/url?hl=enq=http://www.dkfz.de/source=gmailust=1521043877592000usg=AFQjCNEvBdKF2YTYWA7XNiCe7e4pzzkuwg;>christopher.prev...@dkfz.de
  http://www.dkfz.de/; target="_blank"
data-saferedirecturl="https://www.google.com/url?hl=enq=http://www.dkfz.de/source=gmailust=1521043877592000usg=AFQjCNEvBdKF2YTYWA7XNiCe7e4pzzkuwg;>www.dkfz.de

  
  Management
  Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
  VAT-ID No.: DE143293537
  Vertraulichkeitshinweis:
  Diese Nachricht ist ausschließlich für die Personen bestimmt,
  an die sie adressiert ist. 
  Sie kann vertrauliche und/oder nur für den/die Empfänger
  bestimmte Informationen enthalten. Sollten Sie nicht 
  der bestimmungsgemäße
  Empfänger sein, kontaktieren Sie bitte den Absender und
  löschen Sie die Mitteilung. 
  Jegliche unbefugte Verwendung der Informationen in dieser
  Nachricht ist untersagt.
  
  

  
  

  

___
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 https://lists.galaxyproject.org/;

[galaxy-dev] Error during FASTQ preview

2018-03-13 Thread Previti 
Dear all,

I've recently had following error occur on our local Galaxy instance.

Every time I want to preview a fastq file it gives this:

Content Encoding Error

The page you are trying to view cannot be shown because it uses an
invalid or unsupported form of compression.

    Please contact the website owners to inform them of this problem.

Any idea how to solve this...? This is the first time I'm seeing itI
tried changing the data type multiple times (fastq, fastq.gz,
fastqsanger...etc) but this doesn't get rid of it.

Best regards,

Christopher Previti



-- 
*Dr. Christopher Previti*
Genomics and Proteomics Core Facility
High Throughput Sequencing (W190)
Bioinformatician

German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 580
69120 Heidelberg
Germany
Room: B2.102 (INF580/TP3)
Phone: +49 6221 42-4661

christopher.prev...@dkfz.de 
www.dkfz.de 

Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
VAT-ID No.: DE143293537

Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die
Personen bestimmt, an die sie adressiert ist.
Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte
Informationen enthalten. Sollten Sie nicht
der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den
Absender und löschen Sie die Mitteilung.
Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist
untersagt.


___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/