Re: [galaxy-dev] Galaxy and PBS/Torque Cluster

2015-08-27 Thread John Chilton
Ryan, Not sure what the problem is. I'm not sure the Galaxy that is distributed with Biolinux is really setup to be used with PBS/Torque. If you have pbs/torque installed and running properly and if you can submit job scripts via the qsub command as whatever user Galaxy runs under - the job_conf

[galaxy-dev] Galaxy and PBS/Torque Cluster

2015-08-19 Thread Ryan Johnson
Hello All, We are using a Bio-Linux 8 Galaxy instance and are currently trying to integrate in into a PBS/Torque cluster. Currently we are able to run jobs locally but not via PBS. Can anyone provide us with a step by step guide to configure Galaxy and the PBS. I have included some of the er