Re: [galaxy-dev] Galaxy slurm error

[Nate Coraor]

If slurm accounting is configured, `sacct` might reveal more. You might
also check the slurmd logs on the execution host where the job ran.

--nate

On Thu, Jun 15, 2017 at 11:47 AM, Hoover , David (NIH/CIT) [E] <
hoove...@helix.nih.gov> wrote:

> I would guess something about the slurm job exceeded some allocated
> resource (memory, cpu, time) and slurm killed the job.
>
> David Hoover
> HPC @ NIH
>
> On Jun 15, 2017, at 11:28 AM, Nate Coraor  wrote:
>
> Hi Evan,
>
> Are there any other details logged for this job?
>
> --nate
>
> On Thu, Jun 15, 2017 at 9:20 AM, evan clark  wrote:
>
>> Has anyone ever encountered an error such as this when running galaxy
>> with slurm and submitting files for upload and unzip.
>>
>> slurmstepd: get_exit_code task 0 died by signal
>>
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Re: [galaxy-dev] Galaxy slurm error

[Hoover , David (NIH/CIT) [E]]

I would guess something about the slurm job exceeded some allocated resource 
(memory, cpu, time) and slurm killed the job.

David Hoover
HPC @ NIH

> On Jun 15, 2017, at 11:28 AM, Nate Coraor  wrote:
> 
> Hi Evan,
> 
> Are there any other details logged for this job?
> 
> --nate
> 
> On Thu, Jun 15, 2017 at 9:20 AM, evan clark  > wrote:
> Has anyone ever encountered an error such as this when running galaxy with 
> slurm and submitting files for upload and unzip.
> 
> slurmstepd: get_exit_code task 0 died by signal
> 
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Re: [galaxy-dev] Galaxy slurm error

[Nate Coraor]

Hi Evan,

Are there any other details logged for this job?

--nate

On Thu, Jun 15, 2017 at 9:20 AM, evan clark  wrote:

> Has anyone ever encountered an error such as this when running galaxy with
> slurm and submitting files for upload and unzip.
>
> slurmstepd: get_exit_code task 0 died by signal
>
> ___
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> in your mail client.  To manage your subscriptions to this
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>  https://lists.galaxyproject.org/
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[galaxy-dev] Galaxy slurm error

[evan clark]

Has anyone ever encountered an error such as this when running galaxy 
with slurm and submitting files for upload and unzip.


slurmstepd: get_exit_code task 0 died by signal

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