Re: [galaxy-dev] Java memory requirements for Picard index?

2017-07-11 Thread Previti
Dear Börn, Sorry for the late response but thanks! I'll look into it, Christopher On 07/07/2017 06:36 PM, Björn Grüning wrote: > Hi Christopher, > > you can increase the JVM memory options via the job_conf.xml file for a > particular tool. > > Hope this helps, > Bjoern > > Am 06.07.2017 um 13

Re: [galaxy-dev] Java memory requirements for Picard index?

2017-07-07 Thread Björn Grüning
Hi Christopher, you can increase the JVM memory options via the job_conf.xml file for a particular tool. Hope this helps, Bjoern Am 06.07.2017 um 13:05 schrieb Previti: > Dear all, > I seemly have a java issue (out of memory) when trying to construct a > picard index for the rat (rn6) genome bui

[galaxy-dev] Java memory requirements for Picard index?

2017-07-06 Thread Previti
Dear all, I seemly have a java issue (out of memory) when trying to construct a picard index for the rat (rn6) genome build using the picard_index_builder_data_manager. This is strange because other, bigger genomes have not presented any problems... Does anybody have any suggestions? Cheers, Chri