Re: [galaxy-dev] Multiple select input error after update

2015-01-15 Thread Nicola Soranzo
  Hi Alexandre,
the commit seems to be also in galaxy-dist now. Anyway,
this command should do the trick:

hg pull -b stable
https://bitbucket.org/galaxy/galaxy-central

I'd suggest you to use
directly the stable branch of galaxy-central, which usually gets the
hotfixes much faster than galaxy-dist. But that's just my personal
opinion.

Best,
Nicola

Il 15.01.2015 17:32 Alexandre Defelicibus ha
scritto: 

 Hi Daniel, 
 Thanks for the answer. 
 
 How can I update
my Galaxy instance with this fix? The fix is on galaxy-central
repository and I've cloned the galaxy-dist repository. 
 Thanks a lot,

 Alexandre 
 
 2015-01-14 18:29 GMT-02:00 Daniel Blankenberg :
 

Hi Alexandre, 
 Thanks for reporting this issue. We have committed a
fix here
https://bitbucket.org/galaxy/galaxy-central/commits/7fd6061e43d5/ [3]
and it will be applied to additional releases soon. Please let know if
you encounter additional issues. 
 Thanks for using Galaxy, 
 Dan

 
 On Jan 14, 2015, at 1:40 PM, Alexandre Defelicibus wrote: 


 Hi all, 
 I've updated a Galaxy server with the latest stable
distribution latest_2015.01.13 and now a I got an error: 
 

cannot open galaxy.tools.wrappers.DatasetFilenameWrapper: No such
file
 
 The tool has a multiple select field: 
 On the job
details, the select files on the multiple select (there are on my
history already), are showed at the Job command line as follow: 

python
/home/alexandre/mestrado/protpred-galaxy/galaxy-dist/tools/analysis/dominance_ranking.py
-i [, , , ] 
 
 The command on XML is: 
 

dominance_ranking.py -i $input_pdbs 
 This tool was working fine
before the update. 
 Any ideas what Is going wrong? 
 Thanks a
lot, 
 Alexandre -- 
 
 Alexandre Defelicibus 
 Mestrando em
Bioengenharia 
 Programa de Pós-Graduação em Bioengenharia 

Universidade de São Paulo - USP
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Alexandre Defelicibus 
 Mestrando em Bioengenharia 
 Programa de
Pós-Graduação em Bioengenharia 
 Universidade de São Paulo - USP

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Nicola Soranzo
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Re: [galaxy-dev] Multiple select input error after update

2015-01-15 Thread Alexandre Defelicibus
Hi Daniel,

Thanks for the answer.
How can I update my Galaxy instance with this fix? The fix is on
galaxy-central repository and I've cloned the galaxy-dist repository.

Thanks a lot,

Alexandre

2015-01-14 18:29 GMT-02:00 Daniel Blankenberg d...@bx.psu.edu:

 Hi Alexandre,

 Thanks for reporting this issue. We have committed a fix here
 https://bitbucket.org/galaxy/galaxy-central/commits/7fd6061e43d5/ and it
 will be applied to additional releases soon. Please let know if you
 encounter additional issues.


 Thanks for using Galaxy,

 Dan


 On Jan 14, 2015, at 1:40 PM, Alexandre Defelicibus adefelici...@gmail.com
 wrote:

 Hi all,

 I've updated a Galaxy server with the latest stable distribution 
 latest_2015.01.13
 and now a I got an error:

 cannot open galaxy.tools.wrappers.DatasetFilenameWrapper: No such file

 The tool has a multiple select field:
 param name=input_pdbs type=data multiple=true format=pdb
 label=PDB Files /

 On the job details, the select files on the multiple select (there are on
 my history already), are showed at the Job command line as follow:
 python
 /home/alexandre/mestrado/protpred-galaxy/galaxy-dist/tools/analysis/dominance_ranking.py
 -i [galaxy.tools.wrappers.DatasetFilenameWrapper object at
 0x7f4e1a653290, galaxy.tools.wrappers.DatasetFilenameWrapper object at
 0x7f4e1a653bd0, galaxy.tools.wrappers.DatasetFilenameWrapper object at
 0x7f4e1a653d90, galaxy.tools.wrappers.DatasetFilenameWrapper object at
 0x7f4e1a61de10]

 The command on XML is:
 command interpreter=python
dominance_ranking.py -i $input_pdbs
 /command

 This tool was working fine before the update.

 Any ideas what Is going wrong?

 Thanks a lot,
 Alexandre

 --
 Alexandre Defelicibus
 Mestrando em Bioengenharia
 Programa de Pós-Graduação em Bioengenharia
 Universidade de São Paulo - USP
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-- 
Alexandre Defelicibus
Mestrando em Bioengenharia
Programa de Pós-Graduação em Bioengenharia
Universidade de São Paulo - USP
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