Hi there I'm trying to add a wrapper for the vcftools vcf-consensus tool. There is an existing tool collection for vcftools in tools-devteam, so I'm add it there. Wrapper is at:
https://github.com/pvanheus/tools-devteam/tree/master/tool_collections/vcftools/vcftools_consensus I tested this using: planemo conda_install . planemo serve --conda_prefix /home/pvh/miniconda2 --con da_dependency_resolution When the tool executes I get the error: Fatal error: Exit code 2 () Can't locate Vcf.pm in @INC Which implies that the PERL5LIB is not being set correctly when the tool runs. Using planemo test gives me: No tests were executed - see Galaxy output for details. Strangely enough on the pull request the Travis test passes ( https://github.com/galaxyproject/tools-devteam/pull/402). Any idea how to fix this? Thanks! Peter
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