Hi John,
No I haven't been able to figure this out. In answer to your questions, I
haven't modified the run.sh. I do however specify that "upload1" tool be
run on destination "local" since cluster nodes are configured such that
they can't communicate with the outside world which would prevent
Did you ever figure this out? I cannot think of anything that would
cause this - if the job conf is working with Galaxy it should work
with planemo. Are you sure Galaxy was actually using the configuration
and not just the local runner.
Is it possible you've modified run.sh to modify the
Hi,
I posted this question to biostars but didn't get an answer
Is it possible to use "planemo test" functionality on an SGE cluster? I can
correctly run a custom tool on an SGE cluster when I manually run a job
through the galaxy interface. If I change the job_conf.xml so that the job
is
