Hi all, When running bwa-mem (installed version 0.7.12.1) I get an empty result with the stderr giving the following error:
[main] Version: 0.7.12-r1039 [main] CMD: bwa mem -t 1 -v 1 -I 180 localref.fa /home/galaxy/galaxy/database/files/001/dataset_1958.dat /home/galaxy/galaxy/database/files/001/dataset_1961.dat [main] Real time: 12964.149 sec; CPU: 13152.174 sec [bam_sort_core] merging from 50 files... open: No such file or directory [bam_merge_core] fail to open file /home/galaxy/galaxy/database/files/016/dataset_16712.dat.0000 But the files exist and have the .bam extension (i.e. .../016/dataset_16712.dat.000.bam). How can I solve this? Thanks, Cristian
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
