Re: [galaxy-dev] Problem upgrading
My mistake. The tag is there. I thought I had pulled everything, but I had not. -Will On Fri, May 20, 2016 at 11:54 AM, Will Holtz wrote: > And as for "sudo git checkout v16.04" not working, it appears to me that > the release commits have not been given tags since v15.07. > > -Will > > On Fri, May 20, 2016 at 11:52 AM, Scott Szakonyi < > scott.b.szakony...@nd.edu> wrote: > >> Will, thank you so much! That absolutely did the trick. >> >> -Scott >> >> On Fri, May 20, 2016 at 2:48 PM, Will Holtz wrote: >> >>> There is a 'git' missing in there. Try: >>> sudo git checkout master && git pull --ff-only origin master >>> >>> -Will >>> >>> >>> On Fri, May 20, 2016 at 11:42 AM, Scott Szakonyi < >>> scott.b.szakony...@nd.edu> wrote: >>> Hello, I'm currently running Galaxy 16.01, and I'd like to upgrade to 16.04. However, when I attempt to do so, I get an error, and git log shows I'm still on 16.01. $ sudo git checkout master && pull --ff-only origin master M tool-data/all_fasta.loc.sample Already on 'master' -bash: pull: command not found I also tried updating to the exact version: sudo git checkout v16.04 error: pathspec 'v16.04' did not match any file(s) known to git. For the record, I'm using Git 1.7.1. I took my commands directory from the announcement page at https://docs.galaxyproject.org/en/master/releases/16.04_announce.html Any suggestions for ways to get the 16.04 code are greatly appreciated! Best, -- Scott B. Szakonyi Research Programmer *Center for Research Computing* 107 Information Technology Center Notre Dame, IN 46556 http://crc.nd.edu ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ >>> >>> >>> >>> -- >>> The information contained in this e-mail message or any attachment(s) >>> may be confidential and/or privileged and is intended for use only by the >>> individual(s) to whom this message is addressed. If you are not the >>> intended recipient, any dissemination, distribution, copying, or use is >>> strictly prohibited. If you receive this e-mail message in error, please >>> e-mail the sender at who...@lygos.com and destroy this message and >>> remove the transmission from all computer directories (including e-mail >>> servers). >>> >>> Please consider the environment before printing this email. >>> >> >> >> >> -- >> Scott B. Szakonyi >> Research Programmer >> >> *Center for Research Computing* >> 107 Information Technology Center >> Notre Dame, IN 46556 >> http://crc.nd.edu >> > > > > -- > The information contained in this e-mail message or any attachment(s) may > be confidential and/or privileged and is intended for use only by the > individual(s) to whom this message is addressed. If you are not the > intended recipient, any dissemination, distribution, copying, or use is > strictly prohibited. If you receive this e-mail message in error, please > e-mail the sender at who...@lygos.com and destroy this message and remove > the transmission from all computer directories (including e-mail servers). > > Please consider the environment before printing this email. > -- The information contained in this e-mail message or any attachment(s) may be confidential and/or privileged and is intended for use only by the individual(s) to whom this message is addressed. If you are not the intended recipient, any dissemination, distribution, copying, or use is strictly prohibited. If you receive this e-mail message in error, please e-mail the sender at who...@lygos.com and destroy this message and remove the transmission from all computer directories (including e-mail servers). Please consider the environment before printing this email. ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Problem upgrading
And as for "sudo git checkout v16.04" not working, it appears to me that the release commits have not been given tags since v15.07. -Will On Fri, May 20, 2016 at 11:52 AM, Scott Szakonyi wrote: > Will, thank you so much! That absolutely did the trick. > > -Scott > > On Fri, May 20, 2016 at 2:48 PM, Will Holtz wrote: > >> There is a 'git' missing in there. Try: >> sudo git checkout master && git pull --ff-only origin master >> >> -Will >> >> >> On Fri, May 20, 2016 at 11:42 AM, Scott Szakonyi < >> scott.b.szakony...@nd.edu> wrote: >> >>> Hello, >>> >>> I'm currently running Galaxy 16.01, and I'd like to upgrade to 16.04. >>> However, when I attempt to do so, I get an error, and git log shows I'm >>> still on 16.01. >>> >>> $ sudo git checkout master && pull --ff-only origin master >>> M tool-data/all_fasta.loc.sample >>> Already on 'master' >>> -bash: pull: command not found >>> >>> >>> I also tried updating to the exact version: >>> >>> sudo git checkout v16.04 >>> error: pathspec 'v16.04' did not match any file(s) known to git. >>> >>> >>> For the record, I'm using Git 1.7.1. I took my commands directory from >>> the announcement page at >>> https://docs.galaxyproject.org/en/master/releases/16.04_announce.html >>> >>> Any suggestions for ways to get the 16.04 code are greatly appreciated! >>> >>> Best, >>> >>> -- >>> Scott B. Szakonyi >>> Research Programmer >>> >>> *Center for Research Computing* >>> 107 Information Technology Center >>> Notre Dame, IN 46556 >>> http://crc.nd.edu >>> >>> ___ >>> Please keep all replies on the list by using "reply all" >>> in your mail client. To manage your subscriptions to this >>> and other Galaxy lists, please use the interface at: >>> https://lists.galaxyproject.org/ >>> >>> To search Galaxy mailing lists use the unified search at: >>> http://galaxyproject.org/search/mailinglists/ >>> >> >> >> >> -- >> The information contained in this e-mail message or any attachment(s) may >> be confidential and/or privileged and is intended for use only by the >> individual(s) to whom this message is addressed. If you are not the >> intended recipient, any dissemination, distribution, copying, or use is >> strictly prohibited. If you receive this e-mail message in error, please >> e-mail the sender at who...@lygos.com and destroy this message and >> remove the transmission from all computer directories (including e-mail >> servers). >> >> Please consider the environment before printing this email. >> > > > > -- > Scott B. Szakonyi > Research Programmer > > *Center for Research Computing* > 107 Information Technology Center > Notre Dame, IN 46556 > http://crc.nd.edu > -- The information contained in this e-mail message or any attachment(s) may be confidential and/or privileged and is intended for use only by the individual(s) to whom this message is addressed. If you are not the intended recipient, any dissemination, distribution, copying, or use is strictly prohibited. If you receive this e-mail message in error, please e-mail the sender at who...@lygos.com and destroy this message and remove the transmission from all computer directories (including e-mail servers). Please consider the environment before printing this email. ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Problem upgrading
Will, thank you so much! That absolutely did the trick. -Scott On Fri, May 20, 2016 at 2:48 PM, Will Holtz wrote: > There is a 'git' missing in there. Try: > sudo git checkout master && git pull --ff-only origin master > > -Will > > > On Fri, May 20, 2016 at 11:42 AM, Scott Szakonyi < > scott.b.szakony...@nd.edu> wrote: > >> Hello, >> >> I'm currently running Galaxy 16.01, and I'd like to upgrade to 16.04. >> However, when I attempt to do so, I get an error, and git log shows I'm >> still on 16.01. >> >> $ sudo git checkout master && pull --ff-only origin master >> M tool-data/all_fasta.loc.sample >> Already on 'master' >> -bash: pull: command not found >> >> >> I also tried updating to the exact version: >> >> sudo git checkout v16.04 >> error: pathspec 'v16.04' did not match any file(s) known to git. >> >> >> For the record, I'm using Git 1.7.1. I took my commands directory from >> the announcement page at >> https://docs.galaxyproject.org/en/master/releases/16.04_announce.html >> >> Any suggestions for ways to get the 16.04 code are greatly appreciated! >> >> Best, >> >> -- >> Scott B. Szakonyi >> Research Programmer >> >> *Center for Research Computing* >> 107 Information Technology Center >> Notre Dame, IN 46556 >> http://crc.nd.edu >> >> ___ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> https://lists.galaxyproject.org/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ >> > > > > -- > The information contained in this e-mail message or any attachment(s) may > be confidential and/or privileged and is intended for use only by the > individual(s) to whom this message is addressed. If you are not the > intended recipient, any dissemination, distribution, copying, or use is > strictly prohibited. If you receive this e-mail message in error, please > e-mail the sender at who...@lygos.com and destroy this message and remove > the transmission from all computer directories (including e-mail servers). > > Please consider the environment before printing this email. > -- Scott B. Szakonyi Research Programmer *Center for Research Computing* 107 Information Technology Center Notre Dame, IN 46556 http://crc.nd.edu ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Problem upgrading
There is a 'git' missing in there. Try: sudo git checkout master && git pull --ff-only origin master -Will On Fri, May 20, 2016 at 11:42 AM, Scott Szakonyi wrote: > Hello, > > I'm currently running Galaxy 16.01, and I'd like to upgrade to 16.04. > However, when I attempt to do so, I get an error, and git log shows I'm > still on 16.01. > > $ sudo git checkout master && pull --ff-only origin master > M tool-data/all_fasta.loc.sample > Already on 'master' > -bash: pull: command not found > > > I also tried updating to the exact version: > > sudo git checkout v16.04 > error: pathspec 'v16.04' did not match any file(s) known to git. > > > For the record, I'm using Git 1.7.1. I took my commands directory from the > announcement page at > https://docs.galaxyproject.org/en/master/releases/16.04_announce.html > > Any suggestions for ways to get the 16.04 code are greatly appreciated! > > Best, > > -- > Scott B. Szakonyi > Research Programmer > > *Center for Research Computing* > 107 Information Technology Center > Notre Dame, IN 46556 > http://crc.nd.edu > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > -- The information contained in this e-mail message or any attachment(s) may be confidential and/or privileged and is intended for use only by the individual(s) to whom this message is addressed. If you are not the intended recipient, any dissemination, distribution, copying, or use is strictly prohibited. If you receive this e-mail message in error, please e-mail the sender at who...@lygos.com and destroy this message and remove the transmission from all computer directories (including e-mail servers). Please consider the environment before printing this email. ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Problem upgrading
Hello, I'm currently running Galaxy 16.01, and I'd like to upgrade to 16.04. However, when I attempt to do so, I get an error, and git log shows I'm still on 16.01. $ sudo git checkout master && pull --ff-only origin master M tool-data/all_fasta.loc.sample Already on 'master' -bash: pull: command not found I also tried updating to the exact version: sudo git checkout v16.04 error: pathspec 'v16.04' did not match any file(s) known to git. For the record, I'm using Git 1.7.1. I took my commands directory from the announcement page at https://docs.galaxyproject.org/en/master/releases/16.04_announce.html Any suggestions for ways to get the 16.04 code are greatly appreciated! Best, -- Scott B. Szakonyi Research Programmer *Center for Research Computing* 107 Information Technology Center Notre Dame, IN 46556 http://crc.nd.edu ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/