Re: [galaxy-dev] Problem with Biopython

2015-01-05 Thread Peter Cock
On Tue, Jan 6, 2015 at 12:23 AM, Peter Cock wrote: > Yes ;) > > Are you writing your own tool, or trying to install someone else's? > > There are two basic options, > > (1) Install Biopython into the default Python used when jobs are > run. Simple, but manual - and you can only have one version. >

Re: [galaxy-dev] Problem with Biopython

2015-01-05 Thread Peter Cock
Yes ;) Are you writing your own tool, or trying to install someone else's? There are two basic options, (1) Install Biopython into the default Python used when jobs are run. Simple, but manual - and you can only have one version. This is actually what we are still doing on our local Galaxy since

[galaxy-dev] Problem with Biopython

2015-01-05 Thread Alfredo Guilherme Silva Souza
Has anyone used the Biopython in Galaxy ? *Traceback (most recent call last):* * File "/home/steve/galaxy-dist/tools/molecular_dynamics/gromacs.py", line 10, in * *import Bio.PDB.PDBParser* *ImportError: No module named Bio.PDB.PDBParser* Researching I saw that I have to work with eggs in