n-Josas
>>>>> INRA labs. If they are not on the list, I can contact them.
>>>> Please do so. This is great to know. Please also consider to join our
>>>> hackathon:
>>>>
>>>> https://github.com/galaxyproject/tools-iuc/issues/299
>>>&
; Cc:
"Galaxy Dev List" Envoyé:
Mercredi 7 Octobre 2015 14:25:38 Objet: Re: [galaxy-dev] QIIME
tools for Galaxy (WIP,call for collaborators)
Hi Lance,
I will help if I can. I also think we should begin too write 2-3
nice tools in the beginning to test the handshake between them and
issues/299
>>
>> We are always open for new ideas. Would be great to get a nice suite and
>> a few workflows for metagenomic in the near future! :)
>>
>> Thanks,
>> Bjoern
>>
>>> All the best,
>>>
>>> Yvan
>>>
>>&g
, "Daniel Blankenberg" Cc:
"Galaxy Dev List" Envoyé:
Mercredi 7 Octobre 2015 14:25:38 Objet: Re: [galaxy-dev] QIIME
tools for Galaxy (WIP, call for collaborators)
Hi Lance,
I will help if I can. I also think we should begin too write 2-3
nice tools in the beginning to test t
;> De: "Björn Grüning" À: "Lance Parsons"
>> , "Daniel Blankenberg" Cc:
>> "Galaxy Dev List" Envoyé:
>> Mercredi 7 Octobre 2015 14:25:38 Objet: Re: [galaxy-dev] QIIME
>> tools for Galaxy (WIP, call for collaborators)
>>
uot;Daniel Blankenberg"
>
> Cc: "Galaxy Dev List"
> Envoyé: Mercredi 7 Octobre 2015 14:25:38
> Objet: Re: [galaxy-dev] QIIME tools for Galaxy (WIP, call for collaborators)
>
> Hi Lance,
>
> I will help if I can. I also think we should begin too write
Hi Lance,
I will help if I can. I also think we should begin too write 2-3 nice
tools in the beginning to test the handshake between them and lay the
ground work. This will also help to get familiar with the tool.
I still hope some one else from the community shows interest! :)
Thanks,
Bjoern
A
I agree that it would be very nice to get the data flowing between each
of the tools and to be able to mix/match with other tools. That is an
area of Galaxy tool-dev that I'm less familiar with, so any help would
be greatly appreciated.
As for the manual massaging, I agree, however, at this po
Hi Lance,
I looked at this a bit ago and had similar concerns, particularly with the
outputs and inputs not being well-defined. In addition to the output tar ball
—> local, extract —> upload not being great, as you mention, the input
datatypes, etc, could use some work — in the very least, we s
I was recently asked if I could provide a QIIME analysis pipeline for
16S data in Galaxy using tools in the QIIME pipeline (http://qiime.org/).
I did a bit of looking around for existing Galaxy wrappers and found an
application that generates the wrappers for QIIME scripts for Galaxy
(https://
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