Re: [galaxy-dev] Refresh of screens in Galaxy Docker environment

[John Chilton]

It is probably worth looking at this Galaxy issue - this may have
little to do with Docker or the Docker server might have a different
time configured than a local one? History updating is broken for many
clients in 16.04 and I am unsure if this intention is to fix it or
not.

https://github.com/galaxyproject/galaxy/issues/2242

-John

On Sun, May 22, 2016 at 7:17 AM, Björn Grüning
 wrote:
> Hi George,
>
> how do you start your container? Anything special in your network settings.
>
> I can not reproduce this with 16.04 and 16.01 and have never seen this
> before.
>
> Which version of Docker? Is this under Linux?
> I'm a little bit puzzled here.
>
> Sorry,
> Bjoern
>
>> Hi Bjorn,
>>
>> We are using https://hub.docker.com/r/bgruening/galaxy-stable/
>>
>> *To summarize the problem:*
>>
>>
>> We are migrating our Production Galaxy (
>> http://huttenhower.sph.harvard.edu/galaxy/)   to a *Docker* environment.
>>
>> When you submit a job,  the */screen does not refresh/*,  you have to
>> hit *F5* to refresh the screens.
>> I verified the problem occurs *both *when we use *Chrome and IE*
>> *
>> *
>> It is a severe problem, that could impact deployment to our new Docker
>> Platform,  as our Users are not accustomed to press F5 to refresh the
>> screen.
>>
>> Can you look into that?
>>
>> Thanks!
>>
>> George Weingart PhD
>> Huttenhower Lab
>> Harvard School of Public Health
>>
>>
>> *Before F5 pressed*
>>
>> Inline image 1
>>
>> *After F5 pressed.*
>>
>> Inline image 2
>>
>> On Wed, Apr 13, 2016 at 11:10 PM, Björn Grüning
>> > wrote:
>>
>> Hi George,
>>
>> are you using this Docker container?
>>
>> https://github.com/bgruening/docker-galaxy-stable
>>
>> If so which version? I haven't seen this behaviour so far.
>>
>> Ciao,
>> Bjoern
>>
>> Am 14.04.2016 um 08:04 schrieb George Weingart:
>> > Hello,
>> >
>> > We are installing Galaxy in a Docker environment and we are
>> encountering
>> > an issue where we need to refresh the screen (For Example, using
>> F5)  in
>> > order to see the status of the job.
>> > We see that using chrome as browser.
>> > If we don't refresh the screen, it stays (The job might have completed
>> > long ago but it still shows executing in yellow)
>> >
>> > Any suggestions how to resolve the problem?
>> >
>> > Thanks!
>> > George Weingart
>> >
>> >
>> >
>> > ___
>> > Please keep all replies on the list by using "reply all"
>> > in your mail client.  To manage your subscriptions to this
>> > and other Galaxy lists, please use the interface at:
>> >   https://lists.galaxyproject.org/
>> >
>> > To search Galaxy mailing lists use the unified search at:
>> >   http://galaxyproject.org/search/mailinglists/
>> >
>>
>>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
___
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Re: [galaxy-dev] Refresh of screens in Galaxy Docker environment

[Björn Grüning]

Hi George,

how do you start your container? Anything special in your network settings.

I can not reproduce this with 16.04 and 16.01 and have never seen this
before.

Which version of Docker? Is this under Linux?
I'm a little bit puzzled here.

Sorry,
Bjoern

> Hi Bjorn,
> 
> We are using https://hub.docker.com/r/bgruening/galaxy-stable/
> 
> *To summarize the problem:*
> 
> 
> We are migrating our Production Galaxy (
> http://huttenhower.sph.harvard.edu/galaxy/)   to a *Docker* environment.
> 
> When you submit a job,  the */screen does not refresh/*,  you have to
> hit *F5* to refresh the screens.
> I verified the problem occurs *both *when we use *Chrome and IE*
> *
> *
> It is a severe problem, that could impact deployment to our new Docker
> Platform,  as our Users are not accustomed to press F5 to refresh the
> screen.
> 
> Can you look into that?
> 
> Thanks!
> 
> George Weingart PhD
> Huttenhower Lab
> Harvard School of Public Health
> 
> 
> *Before F5 pressed*
> 
> Inline image 1
> 
> *After F5 pressed.*
> 
> Inline image 2
> 
> On Wed, Apr 13, 2016 at 11:10 PM, Björn Grüning
> > wrote:
> 
> Hi George,
> 
> are you using this Docker container?
> 
> https://github.com/bgruening/docker-galaxy-stable
> 
> If so which version? I haven't seen this behaviour so far.
> 
> Ciao,
> Bjoern
> 
> Am 14.04.2016 um 08:04 schrieb George Weingart:
> > Hello,
> >
> > We are installing Galaxy in a Docker environment and we are
> encountering
> > an issue where we need to refresh the screen (For Example, using
> F5)  in
> > order to see the status of the job.
> > We see that using chrome as browser.
> > If we don't refresh the screen, it stays (The job might have completed
> > long ago but it still shows executing in yellow)
> >
> > Any suggestions how to resolve the problem?
> >
> > Thanks!
> > George Weingart
> >
> >
> >
> > ___
> > Please keep all replies on the list by using "reply all"
> > in your mail client.  To manage your subscriptions to this
> > and other Galaxy lists, please use the interface at:
> >   https://lists.galaxyproject.org/
> >
> > To search Galaxy mailing lists use the unified search at:
> >   http://galaxyproject.org/search/mailinglists/
> >
> 
> 
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Re: [galaxy-dev] Refresh of screens in Galaxy Docker environment

[Björn Grüning]

Hi George,

are you using this Docker container?

https://github.com/bgruening/docker-galaxy-stable

If so which version? I haven't seen this behaviour so far.

Ciao,
Bjoern

Am 14.04.2016 um 08:04 schrieb George Weingart:
> Hello,
> 
> We are installing Galaxy in a Docker environment and we are encountering
> an issue where we need to refresh the screen (For Example, using F5)  in
> order to see the status of the job.
> We see that using chrome as browser.
> If we don't refresh the screen, it stays (The job might have completed
> long ago but it still shows executing in yellow)
> 
> Any suggestions how to resolve the problem?
> 
> Thanks!
> George Weingart
>  
> 
> 
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
> 
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
> 
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

[galaxy-dev] Refresh of screens in Galaxy Docker environment

[George Weingart]

Hello,

We are installing Galaxy in a Docker environment and we are encountering an
issue where we need to refresh the screen (For Example, using F5)  in order
to see the status of the job.
We see that using chrome as browser.
If we don't refresh the screen, it stays (The job might have completed long
ago but it still shows executing in yellow)

Any suggestions how to resolve the problem?

Thanks!
George Weingart
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/