Hi Scott,
This isn't currently exposed through the API, but I'm working on
implementing it at https://github.com/galaxyproject/galaxy/pull/2741, if
you'd like to test it.
-Dannon
On Thu, Aug 4, 2016 at 10:38 AM Ouellette, Scott <
scott_ouelle...@hms.harvard.edu> wrote:
> Hi all,
>
> I have a use case where I need to programmatically download both the
> *.bam* and it's index file to run IGV outside of Galaxy, but have not
> found a straightforward way to do so.
> It seems that Galaxy always generates this *.bai *file under the hood,
> and I can download it manually by clicking the “save” icon on the dataset
> in my history. Although, the application I am coding for relies on the
> bioblend Python library.
>
> ---
>
> In bioblend I see a field returned upon a
> `DatasetClient().show_dataset()` but that is
> as far as I've got:
>
> "meta_files": [
> {
> "file_type": "bam_index"
> }
> ],
>
> Any help is appreciated!
>
> Thanks,
> Scott O.
>
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