[galaxy-dev] Set build when discovering output in collection
Hi, as many of you probably know by now, I have a tool that creates an output collection by discovering the datasets in this collection like propsed there: [1] Specifically I have a fastq input with set build information (a ref genome). The output is a collection of fastq files. After I managed to give them the same format like the input (hacky version), I now want them to adopt the build ID. How can I do that? Thanks, Alexander [1] https://bitbucket.org/galaxy/galaxy-central/pull-request/634/allow-tools-to-explicitly-produce-dataset/diff ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Set build when discovering output in collection
FOR GOD'S SAKE SEARCH THE ARCHIVE !!! http://dev.list.galaxyproject.org/Database-Build-td4140140.html https://github.com/galaxyproject/tools-devteam/blob/master/tools/tophat2/tophat2_wrapper.xml#L313 2015-06-26 21:58 GMT-05:00 Alexander Vowinkel vowinkel.alexan...@gmail.com : Hi, as many of you probably know by now, I have a tool that creates an output collection by discovering the datasets in this collection like propsed there: [1] Specifically I have a fastq input with set build information (a ref genome). The output is a collection of fastq files. After I managed to give them the same format like the input (hacky version), I now want them to adopt the build ID. How can I do that? Thanks, Alexander [1] https://bitbucket.org/galaxy/galaxy-central/pull-request/634/allow-tools-to-explicitly-produce-dataset/diff ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Set build when discovering output in collection
And the corresponding pull request: https://github.com/galaxyproject/tools-devteam/pull/173 The BWA github-repo is newer than what is on the toolshed, right? When do you update the toolshed? Best, Alexander 2015-06-26 22:17 GMT-05:00 Alexander Vowinkel vowinkel.alexan...@gmail.com : FOR GOD'S SAKE SEARCH THE ARCHIVE !!! http://dev.list.galaxyproject.org/Database-Build-td4140140.html https://github.com/galaxyproject/tools-devteam/blob/master/tools/tophat2/tophat2_wrapper.xml#L313 2015-06-26 21:58 GMT-05:00 Alexander Vowinkel vowinkel.alexan...@gmail.com: Hi, as many of you probably know by now, I have a tool that creates an output collection by discovering the datasets in this collection like propsed there: [1] Specifically I have a fastq input with set build information (a ref genome). The output is a collection of fastq files. After I managed to give them the same format like the input (hacky version), I now want them to adopt the build ID. How can I do that? Thanks, Alexander [1] https://bitbucket.org/galaxy/galaxy-central/pull-request/634/allow-tools-to-explicitly-produce-dataset/diff ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/