I just hit a problem installing package_bx_python_0_7 via the Admin GUI. Name: bx-python Version: 0.7.1 Type: package Status: Error Error: Error installing tool dependency bx-python version 0.7.1: coercing to Unicode: need string or buffer, NoneType found
Name: galaxy-ops Version: 1.0.0 Type: package Status: Installed Clicked on "Uninstall" for bx-python, told: Uninstall tool dependencies Name: bx-python Version: 0.7.1 Type: package Install directory: This dependency's installation directory does not exist, click <b>Uninstall</b> to reset for installation. Clicked on "Uninstall" again, seemed to work. I went through a series of "repair repositiory" rounds on package_bx_python_0_7 and intersect tool, and it all seems fine now. I'm not sure what the original glitch was, but there are two clear issues here. First, the Unicode error - perhaps previously reported e.g. http://dev.list.galaxyproject.org/How-to-remove-a-broken-toolshed-install-tc4656641.html http://dev.list.galaxyproject.org/tophat2-install-tc4663736.html Those previous discussions suggest the database and file system were out of sync - but clearly this unexpected None value ought to be better handled. Second, the over-escaped bold in the message, presumably part of: https://trello.com/c/oX6i51Mn/2298-back-off-over-escaping Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
