Galaxy itself needs samtools, and this is not handled via the
Tool Shed which only does dependencies of Galaxy Tools.
I don't think the website is clear enough about this,
https://wiki.galaxyproject.org/Admin/GetGalaxy
just points at
https://wiki.galaxyproject.org/Admin/Tools/ToolDependencies
Dear Sir(s),
I have consumed a few days in order to resolve this issue but nothing! I
have installed all the SAM tools of public Galaxy in my local galaxy via
the Toolshed (installing automatically all the dependencies were needed). I
have also export the path of the executable file SAMtools from
