Re: [galaxy-dev] dexseq pysam error

2017-06-21 Thread Rui Wang
Hi Folks, I'm still having difficulty with this...just wondering if anyone has seen this before: For some reason, I only had one time success with installing dexseq 1.22 in the docker galaxy, which I didn't know how it worked out. After that, when I run biocLite("DEXSeq") again, it only installs

[galaxy-dev] dexseq pysam error

2017-06-20 Thread Rui Wang
Hi Folks, I got the galaxy docker image and played with it. However, I keep getting this when I use dexseq: Fatal error: Exit code 1 () Could not import pysam, which is needed to process BAM file (though not to process text SAM files). Please install the 'pysam' library from https://code.google.c