Re: [galaxy-dev] inconsistent state set for workflow submissions [using bioblend]

2017-07-13 Thread John Chilton
The history state being 'ok' isn't a great metric for determining if the workflow is complete. The history state essentially only tells you if there are datasets of certain states in the history. At the start of the workflow - the invocation may be backgrounded and getting ready to run so there

[galaxy-dev] inconsistent state set for workflow submissions [using bioblend]

2017-07-09 Thread Aarthi Mohan
Hi all, I have a local galaxy instance with basic configuration, and automated workflow submission to galaxy using script written with bioblend. Steps within the script: - step1: data upload - step2: dataset_collection creation - step3: workflow submission - step4: every 5 minutes,