Re: [galaxy-dev] python environment on SGE cluster nodes

2017-05-08 Thread David Simpson
Managed to get working by using 



On Mon, 2017-05-08 at 10:52 +0100, David Simpson wrote:
Hi,

We're close to having a working Galaxy job_conf.xml to submit galaxy jobs to an 
SGE cluster.

At the moment a submitted job is failing with:

python: error while loading shared libraries: libpython2.7.so.1.0: cannot open 
shared object file: No such file or directory


We'd like to solve this by sourcing the dev tools for all our jobs:

source /opt/rh/python27 enable


Please could you advise on how to proceed?

regards
David

-- 
David Simpson
Systems Engineer
MRC Centre for Neuropsychiatric Genetics and Genomics
Cardiff University School of Medicine
Hadyn Ellis Building
Maindy Road
Cardiff
CF24 4HQ
--
phone 44 29206 88426
mail SimpsonD4 at Cardiff.ac.uk
-- 
David Simpson
Systems Engineer
MRC Centre for Neuropsychiatric Genetics and Genomics
Cardiff University School of Medicine
Hadyn Ellis Building
Maindy Road
Cardiff
CF24 4HQ
--
phone 44 29206 88426
mail SimpsonD4 at Cardiff.ac.uk
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[galaxy-dev] python environment on SGE cluster nodes

2017-05-08 Thread David Simpson
Hi,

We're close to having a working Galaxy job_conf.xml to submit galaxy jobs to an 
SGE cluster.

At the moment a submitted job is failing with:

python: error while loading shared libraries: libpython2.7.so.1.0: cannot open 
shared object file: No such file or directory


We'd like to solve this by sourcing the dev tools for all our jobs:

source /opt/rh/python27 enable


Please could you advise on how to proceed?

regards
David


--

David Simpson
Systems Engineer
MRC Centre for Neuropsychiatric Genetics and Genomics
Cardiff University School of Medicine
Hadyn Ellis Building
Maindy Road
Cardiff
CF24 4HQ
--
phone 44 29206 88426
mail SimpsonD4 at Cardiff.ac.uk
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/