Re: [galaxy-dev] Cosmetic Makeblastdb error promulgated through wrapper

2015-07-07 Thread Dooley, Damion
So it does return error code 0, thankfully. I've dropped the workaround on https://github.com/peterjc/galaxy_blast/issues/40 , and could do the pull request process in a few weeks. d. ... What is the error code? It might still be zero (which is fine for a warning only). I've reopened

Re: [galaxy-dev] Cosmetic Makeblastdb error promulgated through wrapper

2015-07-04 Thread Peter Cock
Hi Damion, The NCBI have a bug here - if it is just a warning, it shouldn't say Error. We had something similar before: Error: (1431.1) FASTA-Reader: Warning: FASTA-Reader: Ignoring FASTA modifier(s) found because the input was not expected to have any. In that case the NCBI fixed it, see

Re: [galaxy-dev] Cosmetic Makeblastdb error promulgated through wrapper

2015-07-04 Thread Peter Cock
On Sat, Jul 4, 2015 at 5:09 PM, Dooley, Damion damion.doo...@bccdc.ca wrote: Sure I could probably step up to the plate on that one. I haven't reported it to NCBI - it didn't twig that this was an exit code 0 . I'll sneak it into BOSC codefest maybe! d. What is the error code? It might