Re: [galaxy-dev] Does anybody know if ts (a task scheduler) is supported under Galaxy.

2015-11-25 Thread Shane Kelly
Hi Hans-Rudolph,
I am grateful to you (and all the other people who share their
knowledge on this list) for pointing out a ready made, in-built
solution to what I perceived as a problem.

Many thanks,
Shane


>Hi Shane,
>
>
>please allow me to jump in late - since you are looking for a simple 
>solution: why not rely just on the built in job scheduler? Have a look 
>at ~/config/job_conf.xml.sample_advanced
>
>Even on a single box, you can set up different queues with individual 
>restrictions.
>
>Hans-Rudolf
>
>
>
>On 11/24/2015 06:48 PM, Eric Rasche wrote:
>> I'd also recommend HTCondor.
>> Very easy to set up on debian/ubuntu, apt-get has a quick
>> questionnaire that gets you up and running.
>>
>> Cheers,
>> Eric
>>
>> On 11/24/2015 11:46 AM, Björn Grüning wrote:
>>> Hi Shane,
>>>
>>> would Slurm work for you?
>>>
>>> http://slurm.schedmd.com/
>>>
>>> Cheers,
>>> Bjoern
>>>
>>> Am 24.11.2015 um 13:12 schrieb Shane Kelly:
 Hi,
  I am looking for a simple task scheduler to use with Galaxy
 and initially picked Torque, but since my server is a single box,
 Torque would appear to be overkill?

  Can I have any input from anyone who may have used it?

 Thanks for any response
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>>


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Re: [galaxy-dev] Does anybody know if ts (a task scheduler) is supported under Galaxy.

2015-11-25 Thread Hans-Rudolf Hotz

Hi Shane,


please allow me to jump in late - since you are looking for a simple 
solution: why not rely just on the built in job scheduler? Have a look 
at ~/config/job_conf.xml.sample_advanced


Even on a single box, you can set up different queues with individual 
restrictions.


Hans-Rudolf



On 11/24/2015 06:48 PM, Eric Rasche wrote:

I'd also recommend HTCondor.
Very easy to set up on debian/ubuntu, apt-get has a quick questionnaire that 
gets you up and running.

Cheers,
Eric

On 11/24/2015 11:46 AM, Björn Grüning wrote:

Hi Shane,

would Slurm work for you?

http://slurm.schedmd.com/

Cheers,
Bjoern

Am 24.11.2015 um 13:12 schrieb Shane Kelly:

Hi,
 I am looking for a simple task scheduler to use with Galaxy and
initially picked Torque, but since my server is a single box, Torque
would appear to be overkill?

 Can I have any input from anyone who may have used it?

Thanks for any response
___
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Re: [galaxy-dev] Does anybody know if ts (a task scheduler) is supported under Galaxy.

2015-11-24 Thread Eric Rasche
I'd also recommend HTCondor.
Very easy to set up on debian/ubuntu, apt-get has a quick questionnaire that 
gets you up and running.

Cheers,
Eric

On 11/24/2015 11:46 AM, Björn Grüning wrote:
> Hi Shane,
>
> would Slurm work for you?
>
> http://slurm.schedmd.com/
>
> Cheers,
> Bjoern
>
> Am 24.11.2015 um 13:12 schrieb Shane Kelly:
> > Hi,
> > I am looking for a simple task scheduler to use with Galaxy and
> > initially picked Torque, but since my server is a single box, Torque
> > would appear to be overkill?
> >
> > Can I have any input from anyone who may have used it?
> >
> > Thanks for any response
> > ___
> > Please keep all replies on the list by using "reply all"
> > in your mail client.  To manage your subscriptions to this
> > and other Galaxy lists, please use the interface at:
> >   https://lists.galaxyproject.org/
> >
> > To search Galaxy mailing lists use the unified search at:
> >   http://galaxyproject.org/search/mailinglists/
> >
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
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>

-- 
Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, BioBio
Texas A University
College Station, TX 77843
404-692-2048
e...@tamu.edu

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