Re: [galaxy-dev] Galaxy ToolShed Update Problem

2015-04-08 Thread Martin Čech
Hi Zhaozhen, the --config_file argument needs to point to galaxy.ini config so the script can load the database. Galaxy continues to support Python 2.6 and 2.7, I am sorry that this script required 2.7 (or you could `pip install argparse`) - we will look into improving it. Martin, Galaxy Team

Re: [galaxy-dev] Galaxy ToolShed Update Problem

2015-04-07 Thread Martin Čech
Hello Zhaozhen, this is a known problem. The shed_tool_conf.xml got moved along with other configs into /config folder but unfortunately some tools stored the path absolutely in the DB. You can use the following script (which you should find in the Galaxy /scripts folder): https://github.com/galax