I was actually able to solve my problem, turns out your have to execute the javascript in the response from the POST request. I guess if you use a simple html form it is automatic hence why it wasn’t stressed in the link.
> On Jan 24, 2015, at 7:56 PM, Jonathan Laperle <jonathanlape...@icloud.com> > wrote: > > Hi, > > I am trying to add a custom data source to my local galaxy following > approximatly the methodology described here: > > https://wiki.galaxyproject.org/Admin/Internals/DataSources?action=show&redirect=Admin%2FInternals%2FData+Sources > > <https://wiki.galaxyproject.org/Admin/Internals/DataSources?action=show&redirect=Admin/Internals/Data+Sources> > The way I went about it is : > > 1. Galaxy displays my website in the middle frame with a GET containing an > URL and a tool_id. > > 2. The user selects parameters and presses a button which sends a POST > request at the URL obtained at point 1. This request contains the URL to > download the file and the tool_id > > 3. Galaxy does a GET request to the given URL and downloads the file. > > For the xml file it is mostly copy-paste from the UCSC main tool except that > it ends with a get rather than a post. > > > The communication seems to work, in fact I can see that the data is properly > written to a dataset_XXX.dat file at database/files/000/ just like UCSC. > Unfortunately, despite not detecting any error there seems to be an issue as > the history is never updated to reflect the fact that a file was added. > By comparing the terminal output of UCSC main and my custom data source tool > I noticed that the difference was the following line which is not present > when I run my tool: > > 127.0.0.1 - - [24/Jan/2015:19:17:30 -0400] "GET > /api/histories/24d84bcf64116fe7/contents HTTP/1.1" 200 - > "http://127.0.0.1:8080/ <http://127.0.0.1:8080/>" "Mozilla/5.0 (Macintosh; > Intel Mac OS X 10_10_1) AppleWebKit/600.2.5 (KHTML, like Gecko) Version/8.0.2 > Safari/600.2.5” > > This occurs right after: > > galaxy.jobs.handler DEBUG 2015-01-24 19:17:30,330 (110) Dispatching to local > runner > > The request to the history API seems to never occur with my custom tool but I > cannot figure out why. > > Thank you for your help.
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