Hi Geert,
I only saw your reply just now when I checked the archive. I
can confirm that I arrived at the same solution myself via
http://stackoverflow.com/questions/3287038/cron-and-virtualenv but Thankyou
for posting your reply. stackoverflow is a great resource as well as this
one.
Many Thanks!
Regards
jamesp
Regards
Paddy
J P Mullan
On 19 November 2014 at 22:14, James Mullan <jamespamul...@gmail.com> wrote:
> Hello,
> I am trying to figure out how to run the cleanup scripts in a
> cron job. The below works on command line:
>
> python scripts/cleanup_datasets/cleanup_datasets.py config/galaxy.ini -d
> 30 -1 -i
> pysqlite>=2 egg successfully loaded for sqlite dialect
> ##########################################
>
> # 2014-11-19 22:07:32 - Handling stuff older than 30 days
> # Displaying info only ( --info_only )
>
> Deleted 0 histories
> Elapsed time: 0.0684289932251
> ##########################################
>
> but if I try to do this in a cron job as follows:
>
>
> 55 21 * * * python scripts/cleanup_datasets/cleanup_datasets.py
> config/galaxy.ini -d 30 -1 -i >> /media/Store/galaxy/galaxy-dist/temp 2>&1
>
> python: can't open file 'scripts/cleanup_datasets/cleanup_datasets.py':
> [Errno 2] No such file or directory
>
> or if I try to do this :
>
>
> 00 22 * * * python
> /media/Store/galaxy/galaxy-dist/scripts/cleanup_datasets/cleanup_datasets.py
> config/galaxy.ini -d 30 -1 -i >> /media/Store/galaxy/galaxy-dist/temp 2>&1
>
> Traceback (most recent call last):
> File
> "/media/Store/galaxy/galaxy-dist/scripts/cleanup_datasets/cleanup_datasets.py",
> line 13, in <module>
> from galaxy import eggs
> ImportError: No module named galaxy
>
>
> Note that I am directing the output to a file only to try to find out why
> it's not working.
>
>
> Is this a problem with environment?
>
> Any suggestions what to try would be much appreciated.
>
> Regards
>
> James
>
> J P Mullan
>
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