Re: [galaxy-dev] Issue with GATK in workflow

Hi Scott, It is likely that the bahavior you are experiencing is due to a bug in the Workflow framework, so I’d advise submitting an issue describing the problem here https://github.com/galaxyproject/galaxy/issues if the behavior is different than

Re: [galaxy-dev] Issue with GATK in workflow

Hi Greg, That does look quite similar, but the workarounds presented are not solving the issue for us. If you can offer any additional strategies, I would truly appreciate it. Best, Scott On Fri, Apr 15, 2016 at 10:56 AM, Von Kuster, Greg wrote: > Hi Scott, > > I’m not positive, but this beha

Re: [galaxy-dev] Issue with GATK in workflow

Hi Scott, I’m not positive, but this behavior may be related to this issue: https://github.com/galaxyproject/galaxy/issues/1881 Greg Von Kuster On Apr 15, 2016, at 10:52 AM, Scott Szakonyi mailto:scott.b.szakony...@nd.edu>> wrote: Hello all, We have indexed a genome using the appropriate dat