Re: [galaxy-dev] JBrowse on dev branch: progress

2016-02-22 Thread Marius van den Beek
I have occasionally seen this. GNU-coreutils hangs while compiling on ubuntu 14.04 ... there is a `nanosleep` in the configure step, which is never returning. "checking for working nanosleep..." https://bugs.launchpad.net/ubuntu/+source/coreutils/+bug/1079889 Just kill the process (this will happen

Re: [galaxy-dev] JBrowse on dev branch: progress

2016-02-22 Thread Peter van Heusden
Ok, second attempt, perl install died with the same error, so I suspect you're right about the cause. Eric? Peter On 22 February 2016 at 11:41, Peter van Heusden wrote: > Thanks Peter > > I managed, on the second attempt, to get past the gnu coreutils problem. > Zipho noticed a weird lockup tho

Re: [galaxy-dev] JBrowse on dev branch: progress

2016-02-22 Thread Peter van Heusden
Thanks Peter I managed, on the second attempt, to get past the gnu coreutils problem. Zipho noticed a weird lockup though: conftest that seemed to be from the gnu coreutils install wanted to listen on port 4001, which is the same port our uwsgi server listens on. The install has now completed but

Re: [galaxy-dev] JBrowse on dev branch: progress

2016-02-22 Thread Peter Briggs
Forgot to 'reply-to-list', sorry: Hi Peter I think that package_perl_5_18 in the tool shed is broken, I came across the same error last week on both our production instance and a local 'test' instance (both v15.10). My suspicion is that the following lines are to blame: ...