Re: [galaxy-dev] Odd error, solution not understood

[Scott Szakonyi]

Ah, thank you very much, Hans-Rudolf. That did the trick.

Best regards,

Scott

On Wed, Sep 14, 2016 at 6:56 AM, Hans-Rudolf Hotz  wrote:

> Hi Scott
>
> click on the question mark next to 'database' in your history item and set
> the "Database/Build" to the genome you need.
>
>
> Regards, Hans-Rudolf
>
> On 09/13/2016 09:11 PM, Scott Szakonyi wrote:
>
>> Hi all,
>>
>> I'm getting the following error when attempting to do a trackster
>> visualization:
>>
>> Error: The requested genome file (/vectorbase/web/Galaxy/galaxy
>> /tool-data/shared/ucsc/chrom/?.len) could not be opened. Exiting!
>> Couldn't open /vectorbase/web/Galaxy/galaxy/
>> tool-data/shared/ucsc/chrom/?.len
>>
>> I found a discussion related to this error online at
>> https://biostar.usegalaxy.org/p/6938/, but I'm unsure what the offered
>> solution actually means in terms of what I need to do. It says "
>> You'll need to set your dataset's database/dbkey to your custom
>> reference genome before you can visualize it". Can someone point me in
>> the right direction to solve this issue?
>>
>> Thanks in advance,
>>
>> Scott
>>
>> --
>> Scott B. Szakonyi
>> Research Programmer
>>
>> *Center for Research Computing*
>> 107 Information Technology Center
>> Notre Dame, IN 46556
>> http://crc.nd.edu 
>>
>>
>> ___
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>https://lists.galaxyproject.org/
>>
>> To search Galaxy mailing lists use the unified search at:
>>http://galaxyproject.org/search/mailinglists/
>>
>>


-- 
Scott B. Szakonyi
Research Programmer

*Center for Research Computing*
107 Information Technology Center
Notre Dame, IN 46556
http://crc.nd.edu
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Re: [galaxy-dev] Odd error, solution not understood

[Hans-Rudolf Hotz]

Hi Scott

click on the question mark next to 'database' in your history item and 
set the "Database/Build" to the genome you need.



Regards, Hans-Rudolf

On 09/13/2016 09:11 PM, Scott Szakonyi wrote:

Hi all,

I'm getting the following error when attempting to do a trackster
visualization:

Error: The requested genome file 
(/vectorbase/web/Galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len) could not be 
opened. Exiting!
Couldn't open 
/vectorbase/web/Galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len

I found a discussion related to this error online at
https://biostar.usegalaxy.org/p/6938/, but I'm unsure what the offered
solution actually means in terms of what I need to do. It says "
You'll need to set your dataset's database/dbkey to your custom
reference genome before you can visualize it". Can someone point me in
the right direction to solve this issue?

Thanks in advance,

Scott

--
Scott B. Szakonyi
Research Programmer

*Center for Research Computing*
107 Information Technology Center
Notre Dame, IN 46556
http://crc.nd.edu 


___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
   https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
   http://galaxyproject.org/search/mailinglists/


___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/