Dear Team,
Can anyone help us to solve the below issue?
Our galaxy users could not download large sequencing data using wget or
curl.
*Thanks and Regards,*
*Ashok Varadharajan*
On Wed, Mar 22, 2017 at 10:15 AM, Ashok Varadharajan <ashv...@gmail.com>
wrote:
> Dear Team,
>
> We are running galaxy-16.07 behind the proxy using nginx, uwsgi and
> supervisor in scientific linux 7. I have problem with downloading
> datasets using wget.
>
> I am getting the following html for all my datasets in the galaxy when I
> try to download it using wget [for example: wget http://
> {GALAXYURL}/galaxy/datasets/xxxxxxxxxxxx/display?to_ext=tabular]
>
> Can anyone help me to solve this issue ?
>
>
> <!DOCTYPE HTML>
> <html>
> <!--js-app.mako-->
> <head>
> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"
> />
> <meta name="viewport" content="maximum-scale=1.0">
> <meta http-equiv="X-UA-Compatible" content="IE=Edge,chrome=1">
> <title>Galaxy</title>
> <link rel="index" href="/galaxy/"/>
> <link href="/galaxy/static/style/jquery.rating.css?v=1489572328"
> media="screen" rel="stylesheet" type="text/css" />
> <link
> href="/galaxy/static/style/jquery-ui/smoothness/jquery-ui.css?v=1489572328"
> media="screen" rel="stylesheet" type="text/css" />
> <link href="/galaxy/static/style/base.css?v=1489572328" media="screen"
> rel="stylesheet" type="text/css" />
> <link href="/galaxy/static/style/bootstrap-tour.css?v=1489572328"
> media="screen" rel="stylesheet" type="text/css" />
> <script type="text/javascript">
> // this is needed *before* the app code is loaded - many MVC
> access Galaxy.root for their url
> // TODO: change this by using a common Backbone.Model base class
> and url fn
> window.Galaxy = { root: '/galaxy/' };
> </script>
> </head>
> <body scroll="no" class="full-content">
> <div id="everything" style="position: absolute; top: 0; left: 0;
> width: 100%; height: 100%;">
> <div id="background"></div>
> <div id="masthead" class="navbar navbar-fixed-top
> navbar-inverse"></div>
> <div id="messagebox" style="display: none;"></div>
> <div id="inactivebox" class="panel-warning-message"
> style="display: none;"></div>
> </div><!--end everything-->
> <div id='dd-helper' style="display: none;"></div>
> <noscript>
> <div class="overlay overlay-background noscript-overlay">
> <div>
> <h3 class="title">Javascript Required for Galaxy</h3>
> <div>
> The Galaxy analysis interface requires a browser with
> Javascript enabled.<br>
> Please enable Javascript and refresh this page.
> </div>
> </div>
> </div>
> </noscript>
> <script
> src="/galaxy/static/scripts/bundled/libs.bundled.js?v=1489572328"
> type="text/javascript"></script>
> <script src="/galaxy/static/scripts/bundled/login.bundled.js?v=1489572328"
> type="text/javascript"></script>
> <script type="text/javascript">
> app(
> {"redirect": "/galaxy/datasets/xxxxxxxxxxxxxxxx/display",
> "show_welcome_with_login": false, "user": {"quota_percent": null, "id":
> null, "total_disk_usage": 0.0, "nice_total_disk_usage": "0 bytes"},
> "openid_providers": [], "root": "/galaxy/", "config":
> {"communication_server_host": "http://localhost";, "ftp_upload_site":
> null, "mailing_lists": "https://wiki.galaxyproject.org/MailingLists";,
> "nginx_upload_path": "/galaxy/api/tools", "terms_url": null,
> "enable_unique_workflow_defaults": false, "wiki_url": "
> https://wiki.galaxyproject.org/";, "version_major": "16.07",
> "support_url": "https://wiki.galaxyproject.org/Support";,
> "persistent_communication_rooms": [], "remote_user_logout_href": null,
> "message_box_content": null, "logo_src":
> "/galaxy/static/images/galaxyIcon_noText.png",
> "biostar_url_redirect": "http://{GALAXY_URL}/galaxy/biostar/biostar_redirect";,
> "message_box_visible": false, "ftp_upload_dir": "{ftp_upload_dir}",
> "logo_url": "/galaxy/", "brand": "{BRAND}", "search_url": "
> http://galaxyproject.org/search/usegalaxy/";, "screencasts_url": null,
> "ga_code": null, "require_login": true, "communication_server_port": 7070,
> "lims_doc_url": "https://usegalaxy.org/u/rkchak/p/sts";,
> "inactivity_box_content": "Your account has not been activated yet. Feel
> free to browse around and see what's available, but you won't be able to
> upload data or run jobs until you have verified your email address.",
> "citation_url": "https://wiki.galaxyproject.org/CitingGalaxy";,
> "allow_user_creation": false, "is_admin_user": false,
> "allow_user_dataset_purge": true, "server_startttime": 1489572328,
> "biostar_url": null, "datatypes_disable_auto": false, "use_remote_user":
> null, "message_box_class": "info"}, "welcome_url": "/galaxy/root/welcome"},
> {}
> );
> </script>
> </body>
> </html>
>
>
> *Thanks and Regards,*
> *Ashok Varadharajan*
>
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