Re: [galaxy-dev] Running Galaxy jobs remotely via ssh / rsh

2016-02-01 Thread John Chilton
I guess LIBTORQUE should be /root/torque-6.0.0.1-1449528029_21cc3d8 then, the default permissions on /root may be too restrictive - you may have to install this to a more traditional location such as /usr/local/lib or /opt. -John On Wed, Jan 20, 2016 at 10:32 PM, D K wrote: > Hi John, > > Thank

Re: [galaxy-dev] Running Galaxy jobs remotely via ssh / rsh

2016-01-21 Thread D K
Hi John, Thanks for the clarification. I've now installed PBS/torque using the instructions found here: http://www.discngine.com/blog/2014/6/27/install-torque-on-a-single-node-centos-64 I can correctly submit a job so all is good there. However, when I follow the instructions on https://wiki.gal

Re: [galaxy-dev] Running Galaxy jobs remotely via ssh / rsh

2016-01-20 Thread John Chilton
Even if you just have two servers, I would strongly recommend you setup a cluster distributed resource manager (DRM) like SLURM, PBS, or Condor and ensuring there exists a shared file system between Galaxy and the node running the jobs. You wouldn't even need to use the CLI job runner - you could j